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Nadir Now

Euclidean distance between atoms using RDKit

The issue was that I had to embed the molecule to have a 3D conformation. So I added following line:

AllChem.EmbedMolecule(mol)

Feel free to answer with better suggestions and alternatives.

Darren Beattie Follow

The issue was that I had to embed the molecule to have a 3D conformation. So I added following line:

AllChem.EmbedMolecule(mol)

Feel free to answer with better suggestions and alternatives.

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Euclidean distance between atoms using RDKit

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