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Mats Petersson

CRISPR/Cas9 screen analysis with Mageck: paired-end sequencing

Bennison Denny Overton  Follow

The other answer is incorrect. The original poster is asking about paired-end sequencing data, not paired treatment/control experimental design.

Here is how you analyze paired-end sequencing data (this was an answer I gave on Biostars last year):

https://www.biostars.org/p/303656/

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