It would be worth looking at the Tree of Life web project, it isn't downloadable but its a reference source that can be improved on and updated in your website.
ToL contains trees linking everything from bacteria, archaea through to the complete diversity of eukaryotes, but its a bit old with 2008 from my taxonomic knowledge being the last update for some of the entries, e.g. Plasmodium spp..
It would be worth looking at the Tree of Life web project, it isn't downloadable but its a reference source that can be improved on and updated in your website.
ToL contains trees linking everything from bacteria, archaea through to the complete diversity of eukaryotes, but its a bit old with 2008 from my taxonomic knowledge being the last update for some of the entries, e.g. Plasmodium spp..
NCBI maintains an SQL dump of their taxonomic database
You can see what that contains here
For smaller requests (depending on what you need), you might also consider the ENSEMBL REST API - although I don't know of a way to retrieve the complete tree (shoot them an email): https://rest.ensembl.org/taxonomy/classification/53399?content-type=application/json
NCBI maintains an SQL dump of their taxonomic database
You can see what that contains here
For smaller requests (depending on what you need), you might also consider the ENSEMBL REST API - although I don't know of a way to retrieve the complete tree (shoot them an email): https://rest.ensembl.org/taxonomy/classification/53399?content-type=application/json
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It would be worth looking at the Tree of Life web project, it isn't downloadable but its a reference source that can be improved on and updated in your website.
ToL contains trees linking everything from bacteria, archaea through to the complete diversity of eukaryotes, but its a bit old with 2008 from my taxonomic knowledge being the last update for some of the entries, e.g. Plasmodium spp..
It would be worth looking at the Tree of Life web project, it isn't downloadable but its a reference source that can be improved on and updated in your website.
ToL contains trees linking everything from bacteria, archaea through to the complete diversity of eukaryotes, but its a bit old with 2008 from my taxonomic knowledge being the last update for some of the entries, e.g. Plasmodium spp..
More
VOTE