19
You can't cbind a bunch of obscure object types.
If you want merged count tables you should do this:
mdat <- do.call(cbind,lapply(dat,assay))
Where row.names are Ensembl gene IDs and col.names are the SRR accessions.
Then run your table writing command.
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If you want the coordinates of your genes then do this to make a bed with the genomic locations:
library(rtracklayer) export.bed(rowRanges(dat[[1]]),'gene_coords.bed')
library(rtracklayer)export.bed(rowRanges(dat[[1]]),'gene_coords.bed')
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VOTE
2026-08-03
You can't cbind a bunch of obscure object types.
If you want merged count tables you should do this:
Where row.names are Ensembl gene IDs and col.names are the SRR accessions.
Then run your table writing command.
-
If you want the coordinates of your genes then do this to make a bed with the genomic locations:
You can't cbind a bunch of obscure object types.
If you want merged count tables you should do this:
Where row.names are Ensembl gene IDs and col.names are the SRR accessions.
Then run your table writing command.
-
If you want the coordinates of your genes then do this to make a bed with the genomic locations:
More
VOTE