How to download data from SRA in Linux systems via the command line?

So far, grabseqs is the easiest option, a wrapper for fastq_dump and fasterq-dump, you can install it with conda, I recommend you to use an environment:

conda create -n grabseqs -c louiejtaylor -c bioconda -c conda-forge grabseqs

conda activate grabseqs

grabseqs sra SRRNNNNNNNN

conda deactivate

And download directly projects, runs, and bioprojects from SRA with grabseqs sra SRRNNNNNNNN. Check it out here: https://github.com/louiejtaylor/grabseqs

You can install in a different way just in case the first one doesn't work:

conda create -n grabseqs -yc bioconda parallel-fastq-dump pigz 
conda activate grabseqs 
pip install grabseqs

grabseqs sra SRRNNNNNNNN

conda deactivate