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kraken2 to OTU table creation
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+ Bioinformatics
+ Genome
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Lisa Aut
kraken2 to OTU table creation
You need to run
Bracken
to the Kraken2 report output to estimate abundance.
David Bolton
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You need to run
Bracken
to the Kraken2 report output to estimate abundance.
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Gareth Baus
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will be your input for Bracken.
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Eve Reckenbeil
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kraken2 --db ${KRAKEN_DB} --report ${SAMPLE}.kreport ${SAMPLE}.fq > ${SAMPLE}.kraken
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James Leach Jr
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option output from Kraken2 like the input of Bracken for an abundance quantification of your samples. E.g.
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Jill Grant
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--report
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Erik Bartsch
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I have multiple text file as output, and text file contains data like 2 column format with thousands of rows. from these type of outputs how do I generate OTU table
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You need to run Bracken to the Kraken2 report output to estimate abundance.
You need to run Bracken to the Kraken2 report output to estimate abundance.
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