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+ Bioinformatics
+ Genome
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Lisa Aut

kraken2 to OTU table creation

David Bolton  Follow

You need to run Bracken to the Kraken2 report output to estimate abundance.

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Gareth Baus  Follow
will be your input for Bracken.More
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Eve Reckenbeil  Follow
kraken2 --db ${KRAKEN_DB} --report ${SAMPLE}.kreport ${SAMPLE}.fq > ${SAMPLE}.krakenMore
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James Leach Jr  Follow
option output from Kraken2 like the input of Bracken for an abundance quantification of your samples. E.g. More
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Jill Grant  Follow
--reportMore
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Erik Bartsch  Follow
I have multiple text file as output, and text file contains data like 2 column format with thousands of rows. from these type of outputs how do I generate OTU tableMore
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