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Home > Encyclopedia > 5-(Hydroxymethyl)cytosine

5-(Hydroxymethyl)cytosine

5-(Hydroxymethyl)cytosine structure

5-(Hydroxymethyl)cytosine 

structure
  • CAS No:

    1123-95-1

  • Formula:

    C5H7N3O2

  • Chemical Name:

    5-(Hydroxymethyl)cytosine

  • Synonyms:

    2(1H)-Pyrimidinone,6-amino-5-(hydroxymethyl)-;Cytosine,5-(hydroxymethyl)-;2(1H)-Pyrimidinone,4-amino-5-(hydroxymethyl)-;6-Amino-5-(hydroxymethyl)-2(1H)-pyrimidinone;5-(Hydroxymethyl)cytosine;5-(Oxymethyl)cytosine;4-Amino-2-hydroxy-5-pyrimidinemethanol;Demethylbacimethrin;4-Amino-5-(hydroxymethyl)-2(1H)-pyrimidinone;NSC 27368

  • Categories:

    Pharmaceutical Intermediates  >  Heterocyclic Compound

Description

Grey solidChEBI: A nucleobase analogue that is cytosine in which the hydrogen at position 5 is replaced by a hydroxymethyl group.


5-(hydroxymethyl)cytosine is a nucleobase analogue that is cytosine in which the hydrogen at position 5 is replaced by a hydroxymethyl group. It has a role as a human metabolite and a mouse metabolite. It is an aminopyrimidine, a nucleobase analogue, a pyrimidone and an aromatic primary alcohol. It derives from a cytosine.

5-(Hydroxymethyl)cytosine Basic Attributes

141.13

141.13

6CD2RLN1NK

27368

DTXSID70149990

29335990

Characteristics

87.7

-1.5

1.3818 (rough estimate)

>300 °C (decomp)

258.15°C (rough estimate)

282.7±32.3 °C

1.6190 (estimate)

Safety Information

3

24/25

Xi

Irritant

Drug Information

5-hydroxylmethylcytosine

5-(Hydroxymethyl)cytosine Use and Manufacturing

The remainder of the transformations are carried out substantially as described to produce first the corresponding 1-(3, 5-di-O-benzoyl-2-deoxy-2-fluoro-beta-D-arabinofuranosyl)pyrimidine derivative and thereafter the 1-(2-deoxy-2-fluoro-beta-D-arabinofuranosyl)pyrimidine derivative. ... 5-benzylaminocytosine, 5-aminomethylcytosine,

Computed Properties

Molecular Weight:141.13
XLogP3:-1.5
Hydrogen Bond Donor Count:3
Hydrogen Bond Acceptor Count:3
Rotatable Bond Count:1
Exact Mass:141.053826475
Monoisotopic Mass:141.053826475
Topological Polar Surface Area:87.7
Heavy Atom Count:10
Complexity:219
Covalently-Bonded Unit Count:1
Compound Is Canonicalized:Yes

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